YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49640351
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPSLLDLET QLAFYKAYHN NTGNVLIHSI FVPTILFTSM RILNDVKIWN GYTLTHLLAL  60
   61 SFGLFYILLR VGTGILASLI LALTCKFLND GTIKMTQTTA WILFVISWIF QFIGHGVFEK 120
  121 RKPALLDNLV QSLVLAPYFI LYELLFILGF MPELKKNLQA RVDKELDRMR ASK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.77
Transmembrane Helix	21	43	0.78
Non-Cytoplasmic	44	61	0.65
Transmembrane Helix	62	85	0.82
Cytoplasmic	86	97	0.64
Transmembrane Helix	98	118	0.89
Non-Cytoplasmic	119	132	0.71
Transmembrane Helix	133	151	0.89
Cytoplasmic	152	173	0.77