YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49640141
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQSLNEKS GDHFENQMRM ANHDPSESSA YDDLELQKIH TGGDNHEFVF IGRQKFLKED  60
   61 LFTAFGGTLN PGLAPPSTHK FANPAPLGLS AFALTTFVLS MFNARAMGIT IPNVVVGSAA 120
  121 FYGGLVQLIA GIWEIALENT FGGTALSSFG GFWMSFSALY IPFFGVADAY KEHPEQFSSA 180
  181 VGFFLLGWAI FTAGMTVCTM KSTVAFFSLF FFLTITFLLL SIGEFAQNTN VTRAGGVVGV 240
  241 IVAFIAWYDA FAGVATKENS YVTVRPLPLP KPHHTLF

Type	Start	End	Confidence
Cytoplasmic	1	81	0.73
Transmembrane Helix	82	104	0.76
Non-Cytoplasmic	105	108	0.32
Transmembrane Helix	109	133	0.81
Cytoplasmic	134	140	0.37
Transmembrane Helix	141	167	0.78
Non-Cytoplasmic	168	176	0.45
Transmembrane Helix	177	198	0.89
Cytoplasmic	199	203	0.42
Transmembrane Helix	204	226	0.86
Non-Cytoplasmic	227	230	0.45
Transmembrane Helix	231	251	0.86
Cytoplasmic	252	277	0.48