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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|41399289
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.80
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMYLWLKLL AFGFAFLDTE VFVAGENPTS PTTGPTATKK SSVPLSGDPL PTHTTAFSPA  60
   61 SISERENGFL ETTPSLSPAS TSTQVSLDSL DNASAFKTTG VPSEQPPHLP TQADSQTPSA 120
  121 GTDTQALSGL AAHATLSPAP GSNDASDVPG ERSTASTFPT DPVFPLGTTP IPARNSSAAL 180
  181 PARTANTTIT ASSPDSHASE TITLSPSGSS AHSTKIVATT PAKPSCDEKY ANITVDYSYD 240
  241 NNTKLFTAKL NVNEVVKCAD FDCTNNMLHN LKECEIRTVT ISDNSCTAPN NTLKLDVPPE 300
  301 VDKFHLKDHS SPEKANTTIN LKWENTENFT CDRNKITYRF QCGKITSDKE YIVLEDRKPN 360
  361 HNYTCDSEIL YNHRKYININ ETIQTDFGIP EEPQNVTCRS EDAHEGVITW NHPHSLFHSF 420
  421 TLCFQNKPDN CFQVDKNLTK YDLQNLKPYT KYISSLYAYN IAEVQRNGTA AMCHFTTKSA 480
  481 PPSQVWNMTV SMTSDNSMLV KCRPPKDRNG PRERYHLEVE AGDSLVRNES NNHCLFSVKD 540
  541 LQYSTNYTFK AYFHNGDYPG DPFIQFQSTS YNSKALIAFL AFLIIVTSIA LLVVLYKIYD 600
  601 LHKKRSCNLD EQQELVERDD PKQLVNVVPI HADILLETYK RKIADEGRLF LAEFQSIPRV 660
  661 FSKFPIKEAR KSFNQNKNRY VDILPYDYNR VELSEINGDA GSNYINASYI DGFKEPRKYI 720
  721 AAQGPRDETV DDFWRMIWEQ KATVIVMVTR CEEGNRNKCA EYWPSVEEGT RAFGDVVVKI 780
  781 NQHKRCPDYI IQKLNIVNKK EKTAGREVTH IQFTSWPDHG VPEDPHLLLK LRRRVNAFSN 840
  841 FFSGPIVVHC SAGVGRTGTY IGIDAMLEGL EAENKVDVYG YVVKLRRQRC LMVQVEAQYI 900
  901 LIHQALVEYN QFGETEVNLS ELHPYLHNMK KRDPPSEPSP LEAEFQRLPS YRSWRTQHIG 960
  961 NQEENKSKNR NSNVIPYDFN RVPLKHELEM SKESEHDSDE SSEDDSDSEE ASKYINASFI1020
 1021 MSYWKPEVMI AAQGPLKETI GDFWQMIFQR KVKAIVMLTE LKRGDQELCA QYWVEGKQTY1080
 1081 GDIEVDLKDT NKSSTYTLHV FELRHSKRKD PRTVYQYQYT NWSVEELPAE PKELISMIQV1140
 1141 LKQKLPQKNS SEGNKYHKSA PLLIHCRDGS QQTGIFCALL NLLESAETEE VVDVFQVVKA1200
 1201 LRKARPGMIS TFEQYQFLYD TIASTYPAQN GQVKKNNHQE DKIEFDNEVD KVKQDANCVN1260
 1261 PLGAPEKLPE ANEQAAGSEP TSGTEGPEHC VNGPASQALN QGS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle