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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45479860
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.80
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMYLWLKLL AFGFAFLDTE VFVAGENPTS PTTGPTATKK SSVPLSGDPL PTHTTAFSPA  60
   61 SISERENGFL ETTPSLSPAS TSTQVSLDSL DNASAFKTTG VPSEQPPHLP THADSQTPSA 120
  121 GTDTQALSGL AAHATLSPAP GSNDASDVPG ERSTASTFPT DPVFPLGTTP IPARNSSAAL 180
  181 PARTANTTIT ASSPDSHASE TITLSPSGSS AHSTKIVATT PTKPSCDEKY ANITVDYSYD 240
  241 NNTKLFTAKL NVNEVVKCAD FDCTNNMLHN LKECEIRAVT ISDNSCTAPN NTLKLDVPPG 300
  301 VEKFHLKDHT SPEKANTTII LKWETSENFT CDRNKITYRF QCGKITSDKE YIVLEDRKPN 360
  361 HNYTCDSEIL YNHRKYININ ETIQTDFGIP EEPQNVTCRS EGAHEGVITW NHPHSLFHSF 420
  421 TLCFQNKPDN CFQVDKNLTK CDLQNLKPYT KYISSLYAYI IARAQRNGTA VPCHFTTNSA 480
  481 RPSEVQNMTV SITSENSMLV KCNAPKDLNG PRGRYHLEVK DGDSLVRNES NHPCLFSVKD 540
  541 LQYSTNYTFQ AYYHNGDYPG DPVSQFQSTS YNFKALIAFL AFLIIVTSIA LLVVLYKIYD 600
  601 LHKKRSCNLD EQQELVERDD EKQLMNVEPI HADILLKLYK RKIADEGRLF LAEFQSIPRV 660
  661 FSKFPIKEAR KSFIQNKNRY VDILPYDYNR EELSEINGDA GSNYINASYI DGFKEPRKYI 720
  721 AAQGPRDETV DDFWRMIWEQ KATVIVMVTR CEEGNRNKCA SYWPSVEEGT RAFGDVVVKI 780
  781 NQHKRCPDYI IQKLNIVNKK EKTAGREVTH IQFTSWPDHG VPEDPHLLLK LRRRVNAFSN 840
  841 FFSGPIVVHC SAGVGRTGTY IGIDAMLEGL EAENKVDVYG YVVKLRRQRC LMVQVEAQYI 900
  901 LIHQALVEYN QFGETEVNLS ELHPYLHNMK KRDPPSEPSP LEAEFQRLPS YRSWRTQHIG 960
  961 NQEENKVKNR NSNVIPYDFN RVPLKHELEM SKESEHDSDE SSDDDSDSEE ASKYINASFI1020
 1021 MSYWKPEVMI AAQGPLKETI GDFWQMIFQR KVKAIVMLTE LKRGDQELCA QYWGEGKQTY1080
 1081 GDIEVDLKDT NKSSTYTLHV FELRHSKRKD PRTVYQYQYT NWSAEQLPAE PKELISMIQV1140
 1141 LKQKLPQKNS SEGNKYHKSA PLLIHCRDGS QQTGIFCALL NLLESAETEE VVDVFQVVKA1200
 1201 LRKARPGMIS TFEQYQFLYD TIASTYPAQN GQVKKNNHQE DKIEFDNEVD KVKQDANCVN1260
 1261 PLGAPEKLPE ANEQAASSEP TSGTEGPEHC VNGPASPALN QGS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle