YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50295004, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRPGNYFF IVPWIAFIPW YGMLIAMLIC WAAQGHPIYW FMHTEQFPVY ISDIGATNLR  60
   61 PLFIACAGWQ GLGYVITIAC EYFQRAGRWP FRMPNSKSPH VEAEYDNVSS YTERLLHSRL 120
  121 LMPPYYTKHE RNLIFASFVL GCIGEIALLM CSIFSTAKYH HVHISMVAIF CIFMLLSIVC 180
  181 LTAEYFSMGR HYASIHPLAA TKADFDPSNP TNIDSLPWNK WTGHIWNKFT ISATLKTIWC 240
  241 IAAIVWAICF GAIHDNSKSA CFEWLLAFWF GIIFMIISAD FYLGSLYKRS KYFHQIETFA 300
  301 GYYKYDKFAG VRDYESNDSS GKYEDSDRTE TMVQEDSPVE A

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	33	0.89
Non-Cytoplasmic	34	60	0.89
Transmembrane Helix	61	83	0.89
Cytoplasmic	84	132	0.97
Transmembrane Helix	133	156	0.90
Non-Cytoplasmic	157	161	0.82
Transmembrane Helix	162	183	0.91
Cytoplasmic	184	234	0.92
Transmembrane Helix	235	254	0.93
Non-Cytoplasmic	255	264	0.82
Transmembrane Helix	265	284	0.96
Cytoplasmic	285	341	0.98