YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATG27_CANGA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMLGQVVAL AMASSAVALN CKNHNVLSNY NVANKDILLK NELDTPPSKT SEMWYLAPCE  60
   61 DGSRRQRPSE CSSDDLMCAI RHVKVDGSDH LTQKLDVHKS AKYEVEEVES GGFDIRFLGV 120
  121 KWGSNTIDAT LSYSCDTNLK TDELVTTIWN SEYVLIEMSG PSGCKRDGNS DSGDNGNGNG 180
  181 NGNDPDNNNN TGKDKKSKKT SWFTWLFVYA ILFTVIYLMV VSYLNTKGGS FQDFRNEFVE 240
  241 RGTEFITSLP TFVKEVVTKT LGTRDSSASR GGYSAV

Type	Start	End	Confidence
Signal Peptide	1	18	0.80
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	204	0.81
Transmembrane Helix	205	225	0.83
Cytoplasmic	226	276	0.71