YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50294790, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	196	0.56
Transmembrane Helix	197	217	0.66
Non-Cytoplasmic	218	273	0.48
Transmembrane Helix	274	293	0.92
Cytoplasmic	294	300	0.66
Transmembrane Helix	301	321	0.87
Non-Cytoplasmic	322	381	0.72
Transmembrane Helix	382	399	0.53
Cytoplasmic	400	415	0.45
Transmembrane Helix	416	439	0.84
Non-Cytoplasmic	440	461	0.55
Transmembrane Helix	462	486	0.77
Cytoplasmic	487	543	0.54
Transmembrane Helix	544	564	0.82
Non-Cytoplasmic	565	568	0.44
Transmembrane Helix	569	587	0.50
Cytoplasmic	588	594	0.74
Transmembrane Helix	595	618	0.88
Non-Cytoplasmic	619	619	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDELLGDKR FLRIQRLNSP DDGRRHSLQI DSEEHLYEHK EIAVDETHRE VEEDIPSETH  60
   61 TPPELRQTIE VTEKPVGDGE VEQTVKINTE RMNSNGSGKD MEDKNVEKIS KKFKTRYQKG 120
  121 TQDFRSYFDD VAFEFRPSIF DVSINEPYQT KFAGPTLEAS IKSKEKELRK LRREQKRQLD 180
  181 SGEGPVSWEE TLLSSNFSGI YVAIWMTLAL GVLKSIVDYY CETGSLTESE IWKFMTTDLF 240
  241 KVALVDTQMY LATYLSLVVQ YLCKWGLLSW EKQAWLIMAV YEFCYVFFFM IYTEHIMKLH 300
  301 WIAKIFLFLH SLVLLMKMHS YSFYNGYLWE IYDELTYSKK ALAKYRETAK SPIIKTLENS 360
  361 IEFCTLEIKS QSKHNEFPKN ISIGNYFMFT MFPTLVYQIE YPRTKKVRWS YVLEKVCAIF 420
  421 GTIVVMMTVA QIFMYPVAIR ALSIRDSTEQ SLFEKAKEWP RLLIDIVPSF IIMYLLVFYL 480
  481 IWDAILNCIA ELTCFGDRYF YGDWWNCVDW AEFSRIWNVP VHKFLVRHVY HSSMSAFRLN 540
  541 RDQATLFTFF LSSVIHEMAM YVIFKRFRLY LFSFQMLQLP LVAISNTKFM RERTVIGNVI 600
  601 FWLGICLGPS VICTIYLTF