YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49529068
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDNNDQVNL LRDSLSRWNQ GRAQQSQGFN ESAKTLFSSW ADSINERAQD VYSRLPVSRQ  60
   61 DLIQDEEPAW FNLSRTERLI LFVCFILGSA ACFTLCVFLF PVLAIKPRKF GILWSVGSLL 120
  121 FVLAFGIFQG PVAYIKHLTS RERLPFTVFF FGTCALTIYF AAFMKSTILT IPCAVLELIA 180
  181 VLYYAISYFP FGGTGLRMLS SFGINTARGA LHI

Type	Start	End	Confidence
Cytoplasmic	1	78	0.96
Transmembrane Helix	79	103	0.93
Non-Cytoplasmic	104	110	0.81
Transmembrane Helix	111	133	0.92
Cytoplasmic	134	143	0.83
Transmembrane Helix	144	163	0.93
Non-Cytoplasmic	164	172	0.62
Transmembrane Helix	173	192	0.79
Cytoplasmic	193	213	0.73