YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50294582, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMIKNVIAA TAAALMCGSL VEAEVRGYDM IEFSNVGFTG SYTPVKKMSN LDNNSTCKCE  60
   61 VGDRTWFQGD NAPLNEHLSV HFRGPLSLEK FAFYTSPNFV INDNSSNSQS WNRSAFYDAS 120
  121 AQTADNVTFM NNQGADSPCV GKALSYASDN GTSSASSPNV LKADNYVSSD QEYSIFSTVK 180
  181 CPKSGVKNGC GYYRDGIPAF YGFGGETKMF LFEFKMPTET QSNSSSFEFY DMPAIWLLND 240
  241 KIPRTSQYPI NANCSCWSSG CGEFDIFEVM NGTERNHLYS TFHTYQGIED LGTGIQSYGY 300
  301 IPRDTKGTMM GGVIFDSNGN TVSFISNSTS FDQTLSPSAV NSLLRAIPSN ETYSTKLMSI 360
  361 SGVAPSSSKS KSSGAALSVD QGIWYYVFTA FTAVAHFLLI

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	400	0.98