YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAM17_CANGA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSITQGIVR RSVARPGLIR PLVKCNARYY SDKPEDSLTW TDFFQLRKQE RRINVGSSVF  60
   61 TALVGANVSW AYLSTMEIDP TQMIFGFDPL VVVTAGLMAS GALGYLMGPA VGSQVFKLTK 120
  121 GNKLAQYNLK NKEFLKHVIQ NRVDASSQSF SNPVPDYYGE KIGSVKEYRQ WLRDCHAYAK 180
  181 KAKEFL

Type	Start	End	Confidence
Cytoplasmic	1	52	0.99
Transmembrane Helix	53	74	0.91
Non-Cytoplasmic	75	89	0.81
Transmembrane Helix	90	111	0.86
Cytoplasmic	112	186	0.97