YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49528904, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKELKLLIY ANFMLVVFIL YYTFDLLMLC IDDTFQDALL DFELNPPRDR VTGLEVHDGK  60
   61 PELIPKIIHQ TYKTEDIPEQ WKESQKKCID LHPDYEYILW TDEMALKFIK EEYAWFLDTF 120
  121 ENYKYPIQRA DAIRYFILSH YGGIYIDLDD GCERRLDPLL KVPAFVRKTS PLGVSNNVMG 180
  181 SVPRHPFYLK LLNSLKHYDK YWFIPYLTIM GSTGPLFVSV IWKQYKRWGV PENGVVRIMQ 240
  241 PADYKKHTYS FFSISKGSSW HMDDAVFMKS LENHILSCVV AGFIVGFIIL YGEYVFYCWL 300
  301 CASWLGSSND PEAESQDDED DFIYNKGSQY YQQGHGSIFL GTSISPLRKL NKSLFSTLYT 360
  361 KLVPSSSSSS ASACSVSEKY STPKLSRSVA EYYSLRKENS VHFNSPTPKG KRSRKDSNVR 420
  421 FTNFLLSDIE KLDPNVEDLT N

Type	Start	End	Confidence
Cytoplasmic	1	7	0.85
Transmembrane Helix	8	29	0.83
Non-Cytoplasmic	30	201	0.89
Transmembrane Helix	202	222	0.77
Cytoplasmic	223	274	0.72
Transmembrane Helix	275	297	0.77
Non-Cytoplasmic	298	441	0.66