YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49528842
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRISRLLLIA GVAQAAIVTD FIITTLADGT LSTVTSIYDN AKPKTDTDTD TDTDTDTDTN  60
   61 TATGTTKATT TNTNTNTNTN TGTNTGVKLI TTSTVVTDAA GVIKTVPTVI TSGVKQTGTT 120
  121 TGTTTGTTTG TTTGTTGTKK SYVSTITTVD AAGRPVTLTT TITGTNTNTN TNTNTGTANT 180
  181 PYVTTITTTN INGVTVTLTQ TVTPTKAAVD PAAANGALTA FVVKSKPSDL VGTAPDGRPD 240
  241 PSLVSFTEVP ATPVTTVPID TYITITEGTT RTYTTLRVPT SIWVTITNAA GQTVTFQTTY 300
  301 MQRFSSQYLE VASPSSGSIG LGSLQGEVGV VKSVMVMSQS ANAAHNNARA GTPVTSICMS 360
  361 LAMAFLTMFT WFM

Type	Start	End	Confidence
Signal Peptide	1	15	0.97
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	349	0.92
Transmembrane Helix	350	372	0.80
Cytoplasmic	373	373	0.39