YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49528705
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	232	0.76
Transmembrane Helix	233	256	0.71
Non-Cytoplasmic	257	263	0.59
Transmembrane Helix	264	285	0.62
Cytoplasmic	286	304	0.72
Transmembrane Helix	305	327	0.87
Non-Cytoplasmic	328	340	0.76
Transmembrane Helix	341	362	0.85
Cytoplasmic	363	373	0.75
Transmembrane Helix	374	397	0.85
Non-Cytoplasmic	398	405	0.68
Transmembrane Helix	406	430	0.89
Cytoplasmic	431	450	0.80
Transmembrane Helix	451	469	0.55
Non-Cytoplasmic	470	483	0.54
Transmembrane Helix	484	513	0.73
Cytoplasmic	514	529	0.71
Transmembrane Helix	530	549	0.91
Non-Cytoplasmic	550	568	0.65
Transmembrane Helix	569	591	0.59
Cytoplasmic	592	600	0.52
Transmembrane Helix	601	623	0.87
Non-Cytoplasmic	624	627	0.54
Transmembrane Helix	628	651	0.87
Cytoplasmic	652	695	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGILSKTLS EVHPTLLTNG MGITNTHRRI SLGFFPPNRK NPLVRKYRRK RANLNTNDQR  60
   61 SFQSLVDDFG SSVHEPSQFL NYINEDEEDL YYNDIEEGGE LSRTVSLPSL VSETPDLSPP 120
  121 DTDWIIQEHE RRYSSVYNSD NENDLADEPV SIGGSMTNRE LEYDEFMNRI KAQKQVYDSI 180
  181 ASHKYRRRPS LISVSSRGTV PTIYQEINGT DGADVCLPEK ITFREEAKVL SSFSFPLIFT 240
  241 FLLEQIFPMV CSLTVGHLGK NQLAAVSLAS MTSNITLAVF EGIATSLDTL CPQAYGAGRY 300
  301 YSVGIHFQRC VLFSFIIFLP FALFWFFSEP ILFLVVPEKE LIALTSQFLR VLIFGAPAYI 360
  361 LFENLKRFLQ AQGIFDAGIY VLTICAPLNI FVSYTLVWNK YIGIGFIGSA VAVVINFWLM 420
  421 FILLLLYTIY IDGKKCWGGF SKKAFTHWKD LGHLAFSGII MLEAEELSYE ILTLFSAYFG 480
  481 TSYLAAQSAV STMAALLYMV PFAIGISAST RIANFIGAKR VDLAHNASEV GLVFSFGAGL 540
  541 TNCCVLFFGR NIIAHVFSRD DEVIDLMTGL LRLVAVVQIF DSLNAVAGSC LRGQGMQSLG 600
  601 SIVNLLGYYL FGIPLALILG WVFNMKLYGL WIGIGCAMLL IGLIEAYNVL YPNWDYILNY 660
  661 AEILKETEED DDDDSYFTDS DDNDEEPTER SPLLD