YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49528645
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRQVQQSL QDILGYTDRE EVDWGKGYLK KLVTTTTTLY NTSASKIVLT PDEEVARCHI  60
   61 CAVLAAERLA EKHMPDLKYY TDKIPLQPSR VNNLMGYFKQ NLFNMSPVKD MSWTPSPMKR 120
  121 RTRSPVKNND RFTAQDPQSL KKQLFGTPTK STGSPSPFVV PQSPDKSNSN SPRKIRRKLA 180
  181 FEEDDDEADE SVVPSNDSRS NSNNNLREDS ETPSVIDSSS TAPVFGNVAI TTPSKRVLDE 240
  241 DYKEDDESRE SSVQTESSPR KRRLESPRKK NLLSLLEKRH VNISAADIIK ICNTFELPKD 300
  301 VAFHVLEEYY ARSSFLTYSW QLVAGLVINC VFIVFNERRR KDPRIDHLIL TRMQKEMKSK 360
  361 DLSEVIDSTK MVKELLEGQQ WYRELEVKYN YFDGASYNEV LAKKLGSMLQ PNNILATEDQ 420
  421 YKNWSRRIRE DISIREL

Type	Start	End	Confidence
Non-Cytoplasmic	1	316	0.97
Transmembrane Helix	317	335	0.70
Cytoplasmic	336	437	0.70