YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ROT1_CANGA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRSLLFALL SVAGLVAGDA ADLVGTWSSK SNQVFTGPGF YDPIDELLIE PALPGISYSF  60
   61 TEDGWFEEAS YQVSGNPKNP ACPKASLIYQ HGKFELLDNG TLILHPIEVD GRQLFSDPCS 120
  121 DNGISTYTRY NQTEVFKSFE TFIDPYHGVY TLQLYQFNGA PLPPLYLAYR PPMMLPTETL 180
  181 NPTDGSTGSH PTGSSESESQ ESDDTSKRSL LKKRSLREHV KRSLENRYKT NAVKKSDSIF 240
  241 NAAFVWYTSF FLVGAGSLIF ISS

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	242	0.99
Transmembrane Helix	243	261	0.80
Cytoplasmic	262	263	0.64