YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49528522\|emb\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPKLRFNAA LIAIWGLLLI CHILQLYWKQ YWFSIAFICA AILEVLGYIG RTASHFNVYN  60
   61 IDMFLLQIIC LTIAPVFTMG GIYYQLAKLI EIYGHRFSLL PSPMAYSYIF IFSDVVSLAI 120
  121 QAAGGGTSGV AVNEGTSTKK GDRIFEAGIA IQLASMIIFL GLWLHFLYMI YIKVRLEYTG 180
  181 ERRFRFSMLK IPQEKLDHLY REKYSDLRIN PKRFVFHHFN LALTATVLLV IVRCCYRLAE 240
  241 LHQGWRGFLI THEWYFIILD SLMVTLATVI MTIFHPGFAF KGRHLSIPVT HGRVDPETVE 300
  301 STDSHILSES TDSMEKDENE KVAVPEIVPD TDDIEKRPFY KKVPKMSFSI PFRKK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.73
Transmembrane Helix	7	26	0.93
Non-Cytoplasmic	27	31	0.61
Transmembrane Helix	32	52	0.77
Cytoplasmic	53	62	0.51
Transmembrane Helix	63	87	0.87
Non-Cytoplasmic	88	104	0.57
Transmembrane Helix	105	131	0.76
Cytoplasmic	132	146	0.50
Transmembrane Helix	147	169	0.86
Non-Cytoplasmic	170	213	0.57
Transmembrane Helix	214	236	0.87
Cytoplasmic	237	253	0.53
Transmembrane Helix	254	278	0.87
Non-Cytoplasmic	279	355	0.55