YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49528362
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPQKLIKY SNLFFGATTS LAAIGQLSYV FQQFGLFLLG LYALALTIPI IWLEFRVPPK  60
   61 LYKYASTYFS FLGRAIIYLL LSAMTMYGSL FNKLNAVLLM LTGLVYLFLH ASSIIDEPEN 120
  121 FKGQNASIAL NDDIDDEEDI I

Type	Start	End	Confidence
Cytoplasmic	1	9	0.84
Transmembrane Helix	10	29	0.88
Non-Cytoplasmic	30	33	0.77
Transmembrane Helix	34	55	0.89
Cytoplasmic	56	64	0.85
Transmembrane Helix	65	87	0.83
Non-Cytoplasmic	88	93	0.67
Transmembrane Helix	94	114	0.83
Cytoplasmic	115	141	0.88