YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49528195
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGTVSTAVG CAVGIPVGVG VIVACLFWIR MQRRLKEEDI IDQELNRAVY DESGFVSFNN  60
   61 IDTLKAEPNG HPSSEDTNEV MHSSDIDDNG DDDDEDHNAR RNNTYAAQDK NNGKYVPAYR 120
  121 RQINKHNSIL QQQRKSRNLV NTMGHSIESL SMDDHSQANG KSRQVSVYDQ MVPVLDDANR 180
  181 DSSSPFPTND KDTSDKKSNL FQSHDVSANT STSFFETRSN DNLIKNLNSH DFGSYYPRRP 240
  241 STSNLNHSQG SLHTRNSSML SLGKIENAEN VFATPKSENI LKHPHPLEHE SSSISNETNN 300
  301 VTDNTIDGES ASKSSKTYQL KNNYDIQNTS EIAEEDQYEN EFTNYSENKR AYIDGLRPKM 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.63
Transmembrane Helix	7	29	0.90
Cytoplasmic	30	360	0.68