YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49527893, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVAATLIEK ADLSIEDSNG CNAAKHHLSD PGNHPAEHFK KKMSPLRFKM RQFLTRYTDH  60
   61 QSETLANIQH TLRNPVLDVY FKYSALMGAH TFYIIALPIP IWFGHWELTR DLVYIFGYSI 120
  121 YLSGFLKDYW CLPRPRSPPV ERITLSKYTT REYGAPSSHT ANATGVSAYF LWRIWVESNF 180
  181 TLTSKALLSI GVMFYYLTLV VGRVYCGMHG LLDLYSGALV GLACFMGRIG FDYLFPTFKA 240
  241 SEYNWVPVLS VIVSLFLLYK HIKPVDECPC FEDSVAFIGV VSGLDCSNWL IAKFNLNLVC 300
  301 SFIDFEPKNC LHILARLLVG VLTVIVWKYV ISKPLVYFTL VKLVRLKDER KDYHERHEIT 360
  361 KLAAECAEHI GVPNIELLGR FIIYAGVPST VILVCPVIFK ALQL

Type	Start	End	Confidence
Cytoplasmic	1	82	0.95
Transmembrane Helix	83	104	0.85
Non-Cytoplasmic	105	111	0.81
Transmembrane Helix	112	131	0.71
Cytoplasmic	132	180	0.60
Transmembrane Helix	181	205	0.79
Non-Cytoplasmic	206	210	0.45
Transmembrane Helix	211	231	0.88
Cytoplasmic	232	242	0.47
Transmembrane Helix	243	262	0.78
Non-Cytoplasmic	263	273	0.46
Transmembrane Helix	274	292	0.55
Cytoplasmic	293	311	0.73
Transmembrane Helix	312	331	0.89
Non-Cytoplasmic	332	380	0.77
Transmembrane Helix	381	402	0.87
Cytoplasmic	403	404	0.75