YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49527788
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	150	0.98
Transmembrane Helix	151	172	0.89
Non-Cytoplasmic	173	179	0.72
Transmembrane Helix	180	199	0.88
Cytoplasmic	200	217	0.62
Transmembrane Helix	218	239	0.72
Non-Cytoplasmic	240	261	0.78
Transmembrane Helix	262	279	0.94
Cytoplasmic	280	290	0.73
Transmembrane Helix	291	313	0.87
Non-Cytoplasmic	314	340	0.92
Transmembrane Helix	341	360	0.96
Cytoplasmic	361	378	0.92
Transmembrane Helix	379	400	0.93
Non-Cytoplasmic	401	431	0.93
Transmembrane Helix	432	451	0.89
Cytoplasmic	452	478	0.87
Transmembrane Helix	479	498	0.94
Non-Cytoplasmic	499	505	0.81
Transmembrane Helix	506	530	0.87
Cytoplasmic	531	549	0.96
Transmembrane Helix	550	573	0.88
Non-Cytoplasmic	574	587	0.89
Transmembrane Helix	588	608	0.89
Cytoplasmic	609	660	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFGGRRRNE RSQSPDSEEA DVSNYELHNI DDSKKGYDNL GSGSRGATTS AVEYFDKENV  60
   61 DGVNIDEKLQ STTEFGGDEM PRGNIRRFID SFKRAEQQPN QQHNLAEDLE NDLTTAISMN 120
  121 SLDRVQNKPT GNGQMKFEEE ALKKSIKPRH VVMISLGTGI GTGLLVGNAK ALHNAGPAGL 180
  181 VIGYAIMGSC IYCIIQAAGE MAVVYSNLLG GFNTYPSMLV DPGFGFAVAW VYCLQWLCVC 240
  241 PLELVTTSLT IKYWTTTVNP DAFVVIFYVV IIFIQIFGAR GYAEAEFFFN CCKILMIIGF 300
  301 YILGIIINAG GAGNDGYLGA KYWHDPGAFR GTNGIQRFKG IMATFVSAAF AFGATEFIAL 360
  361 TAAEQSNPRK AIPSAAKKVL YRVICIFVGT IALLGFLVPW DSDQLMGAGG SATKASPYVL 420
  421 AISIHGVRVV PHFINAVILI SVFSVANSAF YSSSRLLLGL AQQGYAPKFF DYVDRQGRPF 480
  481 RAMCCAALFG VIAFCAASPK EDQVFTWLLA ISGLSQLFTW IAICVSHIRF RRAMTVQGRS 540
  541 LGEIGFKAQL GVYGSYYATI MMVLALIAQF WVAIAPIGNN GDLDAEGFFE NYLAMPILIA 600
  601 FYFGYKLWKR DWRLFIRAKD IDLDSYRQVF DEELLKQEDE EYKEKLKNGP MWKRVVDFWC 660
  661