YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49527717
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYKPFPAY QGNSNVSAQG SRLRSSSQVS TGASDPVKDH RRKRSSSIIS HVEQETFEDD  60
   61 VDQQLLPNMN ASWVNQRGAW IIHIVVIVLL KMFYNILPGI TAEWSWTLTN MTYIIGFYIM 120
  121 FHLVKGTPFE FNGGAFDNLT MWEQIDHETL FTPSRKFLLA VPIALFLVST HYAHYDLNLF 180
  181 LWNLAVTIFV GVVPKLAWAH RLRISIPGVM RAQIS

Type	Start	End	Confidence
Cytoplasmic	1	78	0.93
Transmembrane Helix	79	97	0.93
Non-Cytoplasmic	98	105	0.66
Transmembrane Helix	106	124	0.80
Cytoplasmic	125	156	0.77
Transmembrane Helix	157	174	0.91
Non-Cytoplasmic	175	178	0.87
Transmembrane Helix	179	199	0.92
Cytoplasmic	200	215	0.94