YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50291839, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDHWKLVA VTAAVTITLT KIAEVAWKKY VEQKDAITQQ VSVKKMLKRE YDDNLFREQL  60
   61 ARNYAFLGED GMEKLKNQYI VVVGAGGVGS WVVTMLIRSG CKKIRVIDFD QVSLSSLNRH 120
  121 SCATLEDVGA SKVDCLKAHM EKIAPWCQIE AINSLWNKEN GEELLLGGGK PTMVVDCIDN 180
  181 IDTKVDLLEF TYSNKIEVIS SMGASTKSDP TRINVGDITI TEEDPLARAV RRRLKIKGIT 240
  241 TGINVVFSAE KPDPRKAKLL PLPDDEYSKG KVGELSALKD FRVRILPVLG TMPGIFGLTI 300
  301 ATWILTKVSG YPMNPIEGKN RIKVYDGIYQ SLAGQMTRIG MPDQRVPIAL KEVGYIVEEV 360
  361 FRGKSPVSGF STRLTLSKWD PKKPVSLQNV VVLTKEEQKE HEQRILNGKE ALSDVYSQDV 420
  421 IDLVNQRFEE ELYYSRYR

Type	Start	End	Confidence
Signal Peptide	1	20	0.43
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	438	0.68