YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50291829, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLGRWFAIL SSKLCSDTDV TKLERSLDVR VTLRRLRSYR PTIGDTVHYS FLSMILLYSY  60
   61 FANPLPFIVK TLIAMILMTL FVVPMTSQFF FNALPILTWL ILYFTSSHIP NSHRPSISVE 120
  121 VLPAIETILY GDNLSEILAA WQNTILDILA WIPYGLFHFG APFVVAIVLF IFGPPTVLQG 180
  181 YAFAFGYVNL FGVLFQNIFP AAAPWYKIHY GLQVANYSIK GMPGGLSRID DLLGVNLYSS 240
  241 GFKNSAVVFG AFPSLHSACA TMEALFFSYC FPSLTPLFIF YVWWLWWSTM YLTHHYFVDL 300
  301 TAGSVLAYFI FQYTKYTHLP IVDPNLLFRW SYDSIEFYDV KNNDPLSITN NDIESIPLNT 360
  361 IELDTEEVFN IEREKSRTPE LSHAVSSSSL ANGRSQTYPN TGNTFKSKTR LSKLVI

Type	Start	End	Confidence
Cytoplasmic	1	42	0.89
Transmembrane Helix	43	62	0.74
Non-Cytoplasmic	63	70	0.51
Transmembrane Helix	71	104	0.72
Cytoplasmic	105	149	0.64
Transmembrane Helix	150	173	0.87
Non-Cytoplasmic	174	179	0.52
Transmembrane Helix	180	200	0.85
Cytoplasmic	201	264	0.62
Transmembrane Helix	265	285	0.92
Non-Cytoplasmic	286	291	0.74
Transmembrane Helix	292	311	0.86
Cytoplasmic	312	416	0.88