YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49527656, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDTYAEKGE SPALNRRQNL TVKTRDRRSS SVGRIDLGDT VPSISTMNET KYSKLEAKRR  60
   61 KRALMGSDEN DLDLMRKLWY SYREVNYRHS WVTPLLILFS VYSAYLTSGN RTETNPLHMF 120
  121 VAISYRIGDT DRYGKGIKDL AFIFYHMIFF TFLREFLMDV VIRPITRILN ITSRHKVKRM 180
  181 MEQMYALFYC GCSGPFGLYI MYHSDLWLFK TKEMYNSYPD FTNPFLYKVF YLGQAAFWSQ 240
  241 QACVLVLQLE RPRKDYKELV FHHIVTLLLI WSSYVFHFTK MGLSIYITMD ISDFFLSLSK 300
  301 ILNYLDSIFT PPVFLVFVGS WIYLRHVVNI RILWSVLTEF KTEGNYVLNF ATSQYKCWIS 360
  361 QPIVFVLIFA LQLVNLYWLF LIFKILLRLI FKGEQKDERS DSESDESTMP GTPADDNITI 420
  421 CINESSKEKD E

Type	Start	End	Confidence
Cytoplasmic	1	84	0.99
Transmembrane Helix	85	106	0.86
Non-Cytoplasmic	107	141	0.91
Transmembrane Helix	142	162	0.87
Cytoplasmic	163	183	0.89
Transmembrane Helix	184	203	0.93
Non-Cytoplasmic	204	228	0.88
Transmembrane Helix	229	249	0.83
Cytoplasmic	250	258	0.89
Transmembrane Helix	259	278	0.91
Non-Cytoplasmic	279	303	0.72
Transmembrane Helix	304	324	0.85
Cytoplasmic	325	357	0.66
Transmembrane Helix	358	381	0.83
Non-Cytoplasmic	382	431	0.64