YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCOP2_PSEST
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFWSWYVT LLSLGTIAAL VWLLLATRKG QRPDSTEETV GHSYDGIEEY DNPLPRWWFM  60
   61 LFVGTVIFAL GYLVLYPGLG NWKGILPGYE GGWTQVKEWQ REMDKANEQY GPLYAKYAAM 120
  121 PVEEVAKDPQ ALKMGGRLFA SNCSVCHGSD AKGAYGFPNL TDDDWLWGGE PETIKTTILH 180
  181 GRQAVMPGWK DVIGEEGIRN VAGYVRSLSG RDTPEGISVD IEQGQKIFAA NCVVCHGPEA 240
  241 KGVTAMGAPN LTDNVWLYGS SFAQIQQTLR YGRNGRMPAQ EAILGNDKVH LLAAYVYSLS 300
  301 QQPEQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.49
Transmembrane Helix	7	26	0.93
Cytoplasmic	27	56	0.58
Transmembrane Helix	57	79	0.87
Non-Cytoplasmic	80	305	0.60