YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50291645, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNSTINLS DDFKFDFYKY TPNLGASIAF AVLFLIAAII ITGQLWILTK SHRQFLTQWM  60
   61 NSPTYYANIR HYNTFKLFAA HIPLIVGCII EVVGYIARSV SRHDVYSLPP FAVQVVLLLV 120
  121 GPTLYAASIY MVFGRMAHLM FVENLMIMPA RFNTVIFVLG DVASLLLQAA GGGMQASAST 180
  181 EKAGSNIVTV GLFIQIAFFG IFMINEFLFV IRVRALRNKN KIASKSNTWI YYNWILIVNS 240
  241 AMILVRSIVR TVEFIQGYDG YITSHEYFLY IFDATPMFLL PLITIVFMMK YNIFEIQRES 300
  301 IQIQSELDKD YESEDNDSSL DIEADIEDGS ENRMSKTEF

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.94
Transmembrane Helix	26	48	0.93
Cytoplasmic	49	76	0.94
Transmembrane Helix	77	97	0.93
Non-Cytoplasmic	98	110	0.88
Transmembrane Helix	111	134	0.89
Cytoplasmic	135	151	0.87
Transmembrane Helix	152	172	0.90
Non-Cytoplasmic	173	188	0.86
Transmembrane Helix	189	210	0.91
Cytoplasmic	211	229	0.90
Transmembrane Helix	230	249	0.96
Non-Cytoplasmic	250	268	0.92
Transmembrane Helix	269	289	0.92
Cytoplasmic	290	339	0.96