YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49527420
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERMVKDVVG HPQDPDERSD NSVSDQPRVD GGKQSNKGNV GHGNGVSDHK RQMVSLNPYG  60
   61 LYPSTVPPFV LESDFRRLHG INDDFNDREV RWANFIGNVG SNVAYSTEQR LPSRGIANNA 120
  121 TLRHNYSVGN IKDQPNRHIE DIIDPLVSTG NNSINESASL DHEEMERKRK IQEEILYDLD 180
  181 SEWKGGERLD AVFNFSVNKD FEFKNEKDRI DWVNYISKVK NAYYAPNKES SGINDESSSS 240
  241 LSQQQEGNRG DRQNYDWIEE LNKEKEKWKK LKQRKIQKWK PALSNLLFYN QYLPLGFRIV 300
  301 IGILCLISLG LSVRIYQNSD SSIEQVEGGG ADLDTGIPQQ ASTIMAICVN TIAIAYTFYI 360
  361 AIDEFSGKPL GLRNPLGKLK LILLDLLFII FASANLALAF NTRFDKEWVC TGLGVTIAEE 420
  421 EVYYPKIPYI CRKQKALASF LFVLLFAWVV TFSVSIARVV DKVHSSATRD

Type	Start	End	Confidence
Cytoplasmic	1	293	0.78
Transmembrane Helix	294	316	0.83
Non-Cytoplasmic	317	340	0.75
Transmembrane Helix	341	360	0.92
Cytoplasmic	361	380	0.74
Transmembrane Helix	381	400	0.93
Non-Cytoplasmic	401	436	0.76
Transmembrane Helix	437	460	0.87
Cytoplasmic	461	470	0.76