YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49527412
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	115	0.99
Transmembrane Helix	116	135	0.91
Non-Cytoplasmic	136	164	0.86
Transmembrane Helix	165	186	0.92
Cytoplasmic	187	194	0.91
Transmembrane Helix	195	214	0.93
Non-Cytoplasmic	215	219	0.83
Transmembrane Helix	220	241	0.92
Cytoplasmic	242	253	0.81
Transmembrane Helix	254	273	0.86
Non-Cytoplasmic	274	288	0.75
Transmembrane Helix	289	306	0.92
Cytoplasmic	307	377	0.95
Transmembrane Helix	378	399	0.87
Non-Cytoplasmic	400	412	0.83
Transmembrane Helix	413	434	0.87
Cytoplasmic	435	441	0.77
Transmembrane Helix	442	463	0.91
Non-Cytoplasmic	464	471	0.75
Transmembrane Helix	472	495	0.92
Cytoplasmic	496	507	0.78
Transmembrane Helix	508	531	0.70
Non-Cytoplasmic	532	543	0.63
Transmembrane Helix	544	564	0.91
Cytoplasmic	565	856	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIISEDEKS VARDREGVLA RAIKVVNRKF RRKDVRREKL ERALSCDNQM TLNSTNLYAA  60
   61 QQQEYQRREE NDIEENQEPE GGNDDIDYDI SILSDEMSTV DDASLLFAEP PQKQSHMMSI 120
  121 VVGAFVAVGG FLFGYDTGLI NSIVDMRYVR ENIAPNHVGF TAQQLAILVS FLSLGTFVGA 180
  181 LSAPVISDKY GRKKTIMFST AVVFSLGNSL QVGAHNIQLL IAGRVISGLG VGLVSAVVPL 240
  241 YQAEAAHKSL RGAIISTYQW AITWGLLVSS AVSQGTHNRN DASSYRIPIG LQYVWAYILA 300
  301 AGMLWLPESP RYYVLRDQLD KAAQSLSFLR GVPIHDSGLL EELVEIKATF DYESSFGKTT 360
  361 FWDCFKSNKS RPKQTLRMFT GIAIQAFQQF SGINFIFYYG VSFFNRSGVE NSYIVSLITY 420
  421 AVNVGFSVPG MFLVEYFGRR SVLLYGGAIM TLSNFIIAIV GSSTQSVVAN KVMIAFICLF 480
  481 IASFAATWGG VVWVISAELY PLGVRAKCTA ICAAANWLIN FVCAFITPYI VDTGERRALI 540
  541 GPKIYFIWGS LNALGILVVY FTVYETRGLT LEEIDELYTK SPNGIVSAKW NRRIRHREKT 600
  601 YGHKEQQNRD RNQQTTKENL RKNVVNEDML SDDLTPRNDS INTHHSVDSN EKYQSENTDN 660
  661 TLAPAVNDRS MMDFGNDMIL HICNRGPPSI STAASVEEFG GNSTQMENLS YNESNSVEKK 720
  721 KVGLFSKFKL GSRKSSINGT EEDSKPKSPQ LGQAEFSPSP LDVKVSDDDH NDFVDLGNGF 780
  781 GLYSVTRRLS SGVPDTSDEE SAYDLGNAPS STNTYRNRGN LDSINTYMSQ LIQSNTYTSQ 840
  841 NTGYSQNDND QTQHHQ