YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RFT1_CANGA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.84
Transmembrane Helix	13	31	0.84
Non-Cytoplasmic	32	42	0.63
Transmembrane Helix	43	61	0.95
Cytoplasmic	62	93	0.92
Transmembrane Helix	94	115	0.92
Non-Cytoplasmic	116	128	0.73
Transmembrane Helix	129	147	0.83
Cytoplasmic	148	167	0.70
Transmembrane Helix	168	185	0.55
Non-Cytoplasmic	186	204	0.58
Transmembrane Helix	205	227	0.77
Cytoplasmic	228	349	0.77
Transmembrane Helix	350	370	0.87
Non-Cytoplasmic	371	385	0.85
Transmembrane Helix	386	408	0.86
Cytoplasmic	409	418	0.78
Transmembrane Helix	419	438	0.94
Non-Cytoplasmic	439	447	0.73
Transmembrane Helix	448	468	0.90
Cytoplasmic	469	483	0.82
Transmembrane Helix	484	502	0.93
Non-Cytoplasmic	503	510	0.67
Transmembrane Helix	511	530	0.92
Cytoplasmic	531	551	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGADILEKT TRGATFLMMG QLFSKIVTFL LNNTLVRYLS PRIFGITAFL EFIVGTVLFF  60
   61 SREAIRLSTQ RIADGNDADN DHDHDRDDSA LQVCVNFAMI PLFIGIPLSI GLIAWQYHNI 120
  121 NGYFVTLPFF QWSVFAIWVG IILELVNEPL FVLNQHFLNY GARSRYESIA VTANCLVNFT 180
  181 VVYSYEKKLI LTSYFDDSER FREGIAILAF ALGKLAYAAT LLMCYYYNYL MNFKSNKPFK 240
  241 LSLQKIKSKV NEKQTYYFRS DILEHFKKVY FQLCFKHLLT EGDKLIINTF CTVEEQGIYS 300
  301 LLSNYGSLIT RLLFAPIEES LRLLLAVLLS KKDSKNLQLS MKVLVNLTKF YLYLSLLVMI 360
  361 FGPNNSSYLL QFLIGSKWST NSVLHAIRVY CVYIPFLSFN GIFEAFLASV ATGDQILRHS 420
  421 YFMMMCSFAF LINSWIFIEY LDLSVNGLII SNIINMSLRI IYSFSFIVKF YRELHTESSI 480
  481 FMNFTNFKAT LGAAALVAIL NWQMVGYVSS FNGFITSATL ALILLSVILI KERATLNELI 540
  541 INRRAANMKS V