YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49527044, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	217	0.87
Transmembrane Helix	218	239	0.82
Non-Cytoplasmic	240	253	0.67
Transmembrane Helix	254	278	0.72
Cytoplasmic	279	291	0.80
Transmembrane Helix	292	314	0.92
Non-Cytoplasmic	315	331	0.83
Transmembrane Helix	332	350	0.87
Cytoplasmic	351	361	0.76
Transmembrane Helix	362	384	0.91
Non-Cytoplasmic	385	394	0.82
Transmembrane Helix	395	419	0.82
Cytoplasmic	420	445	0.92
Transmembrane Helix	446	468	0.84
Non-Cytoplasmic	469	477	0.72
Transmembrane Helix	478	500	0.76
Cytoplasmic	501	518	0.78
Transmembrane Helix	519	541	0.88
Non-Cytoplasmic	542	556	0.87
Transmembrane Helix	557	579	0.80
Cytoplasmic	580	594	0.81
Transmembrane Helix	595	617	0.91
Non-Cytoplasmic	618	623	0.83
Transmembrane Helix	624	645	0.93
Cytoplasmic	646	665	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNQFKYTTD ERRSSVIYST SVGKGGLYVP QDYIPPEATE RVIDEEMERG DSSDEPLTYQ  60
   61 SLSVNRNSNA GSNKRRSDEY QSLIEANNAR TLQREHNARQ SITNADGYGA ISNYRKNSIN 120
  121 KELLEEERDL LIDNHLLDTS KSRRHSQSVG INAAQDFFLG QGYNENTNSV HPDLFIEGEE 180
  181 EVEEEEEEEE IINTWEDAIE SGKEISTSFH REIQVISVNA FPLVFTFILQ NSLSLASIFS 240
  241 VSHLGTKELG GVTLGSMTAN ITCLAAIQGL CTCLDTLCSQ AYGARNNHLV GVLVQRCAII 300
  301 TCLAFLPVMY IWFFWSDRIL ASMIPEKELC SLAASYLKIT AIGVPGFIFF ECGKRFLQCQ 360
  361 GIFHASTIVL VICAPLNAIL NYILVWDKNI GIGYLGAPTS VAISYWAMAL GLLAYTVLTK 420
  421 HPANPMKCWN GVIKPNQLFR NWKKMFNLAL PGIIMVEAEF LGFEILTVFA SRIGTAPLGA 480
  481 QSIVATVASL AYQVPFSISV STSTRVANFI GASLYKSCII TCKVSLLLSF ACSSLNMLII 540
  541 FTFKKQIAGL FSSEEDVVSL VVSTLPILAF MQLFDAFNAS TAGCLRGQGR QKIGGYINLF 600
  601 AFYCIGIPMA YCLAFVFNTG VGGLWYGITC ALVMMSICQG YAVFHCDWKQ IIEAAKVRNS 660
  661 ESCRP