YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50290303, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSFVPVVWD SQAVSGIAGS VSIACWVVVF VPQIYENFYR KSADGLSLLF VVLWLAGDVF  60
   61 NLVGAMMQHL LLTMVILAAY YTAADVILLI QCLWYDNEEK LDPIHFSPAN PINENVLQDV 120
  121 FNEHQPLLTS GEPTRGSEAE NNSRSQAIEA LLEADEQKTK RSNLFNDFTI VALVILGGIV 180
  181 SWYVSYCANP PEPIVGEPDV EMNMLAQSFG YLSAVLYLGS RVPQILLNFK RKSCEGISFL 240
  241 FFLFACLGNT TFIISVLAIS TDYRYLLVNA SWLIGSSGTL VMDFIIFIQF FAYGTSKPIE 300
  301 LPRDEERLA

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.86
Transmembrane Helix	13	35	0.87
Cytoplasmic	36	44	0.80
Transmembrane Helix	45	65	0.87
Non-Cytoplasmic	66	70	0.62
Transmembrane Helix	71	95	0.80
Cytoplasmic	96	163	0.99
Transmembrane Helix	164	186	0.88
Non-Cytoplasmic	187	203	0.92
Transmembrane Helix	204	225	0.83
Cytoplasmic	226	236	0.87
Transmembrane Helix	237	259	0.93
Non-Cytoplasmic	260	269	0.83
Transmembrane Helix	270	293	0.89
Cytoplasmic	294	309	0.95