YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50290281, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.99
Transmembrane Helix	69	89	0.91
Non-Cytoplasmic	90	116	0.92
Transmembrane Helix	117	137	0.91
Cytoplasmic	138	145	0.73
Transmembrane Helix	146	164	0.95
Non-Cytoplasmic	165	170	0.77
Transmembrane Helix	171	192	0.91
Cytoplasmic	193	202	0.87
Transmembrane Helix	203	225	0.87
Non-Cytoplasmic	226	233	0.72
Transmembrane Helix	234	253	0.97
Cytoplasmic	254	319	0.98
Transmembrane Helix	320	340	0.86
Non-Cytoplasmic	341	359	0.85
Transmembrane Helix	360	381	0.94
Cytoplasmic	382	388	0.92
Transmembrane Helix	389	411	0.93
Non-Cytoplasmic	412	429	0.85
Transmembrane Helix	430	452	0.90
Cytoplasmic	453	466	0.87
Transmembrane Helix	467	488	0.91
Non-Cytoplasmic	489	497	0.72
Transmembrane Helix	498	518	0.93
Cytoplasmic	519	570	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGEKVELSS MDSAIEIRHV NQHAKEISSE NKSESYDDNK EFEGSNRVVI KPVNDEDDVS  60
   61 VMINFNQGVS HFIIMLTFVA SLSGFLFGYD TGYISSALIS IGTDLDNKEL TYGEKEITTA 120
  121 ATSLGALIFA LVAGFSVDIF GRKPCLMFSN IMFLIGAILQ VTAHKFWQMT AGRFIMGFGV 180
  181 GIGSLIAPLY ISEIAPKMIR GRLTVINSLW LTGGQLIAYG CGAGLNHVHN GWRILVGLSL 240
  241 IPTVLQFVFF IFLPDTPRYY VMKGDYEKAK SVLKRSYNGV SDELIDRKIE ELLALNQSIP 300
  301 GKNHVERTWN AVKELHTKPA NFRALIIACG LQGIQQFTGW NSLVYFSGTI FESVGFKNSS 360
  361 AVSIIVSGTN FIFTLVAFFC IDKIGRRNIL IIGIPGMTVA HVMSAIAFHF IGIKFVGNTA 420
  421 IVEHSGFSSW GIVIIVFIIM FAAFYALGIG TVPWQQSELF PQNVRGVGTA FATATNWAGS 480
  481 LVIASTFLTM LQNITPTGTF GFFAGLCVVS FFFCYFCYPE LSGLELEEVQ TILQDGFNVQ 540
  541 ASKELAKKRK RQIAVLKKAK HQPTEEIIEE