YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50290119, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSWLFGKVG GNVEKKEEQK DDKLGFDSSQ LTDISTLISA PGALDPARLH PLAGLERGVE  60
   61 YLDLEEEQLS TMEGSQGLIP SRGWTDDLCY GTGAVYLIAL GIGGVSGFIQ GVKNIPPNSP 120
  121 GKLQLNTILN HVTKRGPFLG NNAGVLALSY NLINSSIDAF RGKHDTPGSI VAGALTGALF 180
  181 KSSKGLKPMA YASAIVATTA GAWSAAKHKV LE

Type	Start	End	Confidence
Cytoplasmic	1	87	0.72
Transmembrane Helix	88	109	0.68
Non-Cytoplasmic	110	212	0.64