YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49526736, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFSIALYY LRTVSWVLIL MVAAAYGTVA SVFLTLIGKQ HLAQWATARF YYYAMSMLMG  60
   61 IDVKIINEDV LKGKPFIAVS NHQSTLDILF LGRIFPQGCT VTAKKSLKYV PFLGWFMALS 120
  121 GTYFLDRSNR EKSVSTLNRG LQNIREKKRA LWIFPEGTRS YSTTPKILPF KKGAFHLAQQ 180
  181 GQIPIVPVVI SNTSTIMCSK YNVFNRGCIT CKVLDPIPTK DLKKEEVGEL AEKVRNMMEK 240
  241 EIMDLGYSKA INDTNLPPEA IEYMQKNNKK PSSVESTTEY GSIKKDEATV MVSSGSNSHL 300
  301 EQLS

Type	Start	End	Confidence
Cytoplasmic	1	12	0.48
Transmembrane Helix	13	37	0.79
Non-Cytoplasmic	38	49	0.53
Transmembrane Helix	50	66	0.38
Cytoplasmic	67	108	0.51
Transmembrane Helix	109	125	0.37
Non-Cytoplasmic	126	304	0.69