YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50289971, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	112	0.98
Transmembrane Helix	113	132	0.92
Non-Cytoplasmic	133	161	0.91
Transmembrane Helix	162	183	0.92
Cytoplasmic	184	191	0.85
Transmembrane Helix	192	211	0.93
Non-Cytoplasmic	212	216	0.68
Transmembrane Helix	217	238	0.90
Cytoplasmic	239	250	0.80
Transmembrane Helix	251	270	0.93
Non-Cytoplasmic	271	285	0.83
Transmembrane Helix	286	303	0.94
Cytoplasmic	304	372	0.96
Transmembrane Helix	373	396	0.84
Non-Cytoplasmic	397	409	0.80
Transmembrane Helix	410	431	0.89
Cytoplasmic	432	438	0.85
Transmembrane Helix	439	461	0.92
Non-Cytoplasmic	462	468	0.86
Transmembrane Helix	469	492	0.93
Cytoplasmic	493	504	0.87
Transmembrane Helix	505	528	0.85
Non-Cytoplasmic	529	541	0.90
Transmembrane Helix	542	562	0.92
Cytoplasmic	563	762	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSFEILPY RGDDQIPRVD SGGLRRRASQ TINTNHDDTC VDIDAYNSGI DVSSKNEYLG  60
   61 INTADDDNEY GNGGMQNYEG PVNEQAIHCQ TNDISENENN LQLLGQPLPL RSTMMTTFVG 120
  121 LFVAVGGFLY GYDTGLINSI TDMKYVKEHI APNHSFFTTT QISMLVSFLS LGTFVGALIA 180
  181 PWISDIYGRK STIIFSTMII FSIGNSLQVA AGGLALLIVG RVISGIGIGI ISAVVPLYQA 240
  241 EAAQKHMRGA IITTYQLAIT LGLLVSSAVS QGTESINAPS SYRVPIGLQY VWSVVLGVGM 300
  301 VFLPESPRYY IMKDEIEEAA RSLSFLRGIS LEDPRLLEEL VEIKANYDYE SSFGPVSIWD 360
  361 CFRSSEQRPK QVLRMFTGIS IQAFQQFSGI NFIFYYGVYF FNKTGIKSSY LVSFVTYAVN 420
  421 VAFNIPGMFL IDYLGRRKVL IFGGIAMTAC NFIIAIVGVS AKSIVSNNVM IAFICVFIAA 480
  481 FSSTWGGVVW VISAELFPLG VRSKCTAICA AANWLVNFVC ALMTPYIVDT GSNYTSSMGT 540
  541 KIYFIWGSLN ALGTIVAYLT VYETRGLTLE EINELYVNSP TPFASNEWNR KIRTESTIPP 600
  601 MVHDHELDNH IVPTMDNILH SRNPNQPYSS DENQDVIVGE DKLDLEQGYN KEIHNHRDDN 660
  661 NVSPIPFLQE QNGKEFSNGA DFSPSTHSTF ALTEHIPANY VELGNGFGLN TYRGGPPSIS 720
  721 DSSDDDHCTH WQSPENGSPI YHEILSSNDT NSGTYNKNSE NL