YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50289671, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTESVYRWV LLGICPTILI LGNIIYMAYL DGPIAVNKDG FVNRILVKRG WFWTTVIGWL  60
   61 CILRYDAKRQ WKSSLKRYLI LTLWWYVFTQ GILWFDIPPI MDLIFKYSGG SCNFDIYDSD 120
  121 GNVNLKFQDS WRRRIKSWRM IYDKVKDYQK NGKNPLAVDS KLMDFVTGSI EKAIEHYSYH 180
  181 IKSNIMIKEI SRLLSDLNIT YSTEQINDFI KNFISNTTVG NSSGANSTLD NSFACRLNGG 240
  241 YWQGGHDPSG HIFLLTLMIL FLVGESKQFI VGAVMRVVDT RKYVMDKIKK ICNEPMANAS 300
  301 VYERRVRKLM RCLSFSASYI LWENPVILLL LLLAIWVWNF VITVIVFHTL TEQLSGLFFA 360
  361 YVVGALLYYD Y

Type	Start	End	Confidence
Cytoplasmic	1	8	0.87
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	48	0.88
Transmembrane Helix	49	67	0.89
Cytoplasmic	68	77	0.89
Transmembrane Helix	78	97	0.87
Non-Cytoplasmic	98	249	0.96
Transmembrane Helix	250	271	0.84
Cytoplasmic	272	314	0.94
Transmembrane Helix	315	338	0.81
Non-Cytoplasmic	339	344	0.62
Transmembrane Helix	345	369	0.72
Cytoplasmic	370	371	0.74