YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49526348
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFSWPYPDP ETIDGYWGKP TALIDWCEEN YVVTPYIAEW CNTITNAAFL VVAFYCTYSA  60
   61 YTNKLEKRFI FIGLGFSLVG IGSWLFHMTL QYRFQLLDEL PMLYATVIPS WSIFVENQEN 120
  121 LIKNVDERKA KSLRIQFIYS ALLFGFVSIL TWLYIVVRVV EIFQILYGVL TVMVVIASGI 180
  181 LTYRDVHDPV AKRNLFTTMC LGIVPFVLGF ICWQLDIHLC SLWIHIRRTY LELPLGILLE 240
  241 LHGWWHLLTG TGVYIYVVYL QYLRVMTQGR GDDYIFIYRW SFFPELVKKG LTVRTPYSLE 300
  301 FWGPRADVKA TKKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.56
Transmembrane Helix	40	58	0.61
Cytoplasmic	59	68	0.76
Transmembrane Helix	69	88	0.96
Non-Cytoplasmic	89	95	0.73
Transmembrane Helix	96	115	0.80
Cytoplasmic	116	134	0.93
Transmembrane Helix	135	156	0.94
Non-Cytoplasmic	157	162	0.87
Transmembrane Helix	163	183	0.95
Cytoplasmic	184	194	0.86
Transmembrane Helix	195	215	0.94
Non-Cytoplasmic	216	241	0.91
Transmembrane Helix	242	260	0.94
Cytoplasmic	261	314	0.95