YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49526167
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNGTLFEQ SFNLKGGYDY MHTVSAPEIK LTPREDLTSY CSDGILALAA PVIAYWAQSA  60
   61 FFHIIDVFHL AEKYRIHPSE EIEKRNRATR LQVLREVIFQ HIVQTVVGLI FLKFADESVT 120
  121 GFEQNEMWHW RQQAPGFIPD AAVYYAYMYG VSLIKLSLGF LFIDTWQYFW HRVMHLSPFM 180
  181 YKYFHSIHHE LYVPYAYGAL FNNPVEGFIL DTLGTGIAMF LTGLTHREEA VLFTFATMKT 240
  241 IDDHCGYALP FDPFQIVFPN NAVYHDIHHQ QFGLKTNFAQ PFFTFWDNLF GTNFKGFEEY 300
  301 QKKQRRVTID KYKEFLAKRE AEKLEKIKNF SKKNENKKEK

Type	Start	End	Confidence
Cytoplasmic	1	96	0.62
Transmembrane Helix	97	115	0.47
Non-Cytoplasmic	116	144	0.70
Transmembrane Helix	145	166	0.76
Cytoplasmic	167	340	0.68