YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22532393, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.50
Transmembrane Helix	13	33	0.93
Non-Cytoplasmic	34	89	0.58
Transmembrane Helix	90	112	0.87
Cytoplasmic	113	132	0.52
Transmembrane Helix	133	157	0.78
Non-Cytoplasmic	158	187	0.54
Transmembrane Helix	188	213	0.80
Cytoplasmic	214	220	0.50
Transmembrane Helix	221	243	0.73
Non-Cytoplasmic	244	292	0.58
Transmembrane Helix	293	315	0.69
Cytoplasmic	316	321	0.59
Transmembrane Helix	322	343	0.94
Non-Cytoplasmic	344	362	0.65
Transmembrane Helix	363	389	0.79
Cytoplasmic	390	399	0.62
Transmembrane Helix	400	420	0.93
Non-Cytoplasmic	421	450	0.62
Transmembrane Helix	451	472	0.79
Cytoplasmic	473	473	0.36
Transmembrane Helix	474	500	0.72
Non-Cytoplasmic	501	536	0.64
Transmembrane Helix	537	559	0.87
Cytoplasmic	560	567	0.57
Transmembrane Helix	568	589	0.87
Non-Cytoplasmic	590	646	0.64
Transmembrane Helix	647	675	0.71
Cytoplasmic	676	736	0.70
Transmembrane Helix	737	760	0.74
Non-Cytoplasmic	761	764	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVVLLPDLG TEILIPVCAV IGIVFSLIQW YVVSQVKLSP DSGRSNNNKN GFSENLIEEE  60
   61 EGINDQSVVA KCAEIQNAIS EGSTSFLYTM YQYVGIFMIA FAVLIFVFLG SVEGFSTKSQ 120
  121 ECTYDKSKTC KPALATAIFS TVSFLLGAVT SLASGFLGMK IATYANARTT LEARKGVGKA 180
  181 FIVAFRSGAV MGFLLAANGL LVLYITILLF KLYYGDDWEG LFEAITGYGL GGSSMALFGR 240
  241 VGGGIYTKAA DVGADLVGKI ERNIPEDDPR NPAVIADNVG DNVGDIAGMG SDLFGSYAES 300
  301 SCAALVVASI SSFGINHELT AILYPLLISS VGIVICLITT LFATDFFEIK AVKEIEPALK 360
  361 KQLVISTALM TVAVAVISWV ALPSSFTIFD FGSQREVKNW QLFLCVAVGL WAGLIIGFVT 420
  421 EYYTSNAYSP VQDVADSCRT GAATNVIFGL ALGYKSVIIP IFAIAVSIFV SFSFAAMYGI 480
  481 AVAALGMLST IATGLAIDAY GPISDNAGGI AEMAGMSHRI RERTDALDAA GNTTAAIGKG 540
  541 FAIGSAALVS LALFGAFVSR AAISTVDVLT PKVFIGLLVG AMLPYWFSAM TMKSVGSAAL 600
  601 KMVEEVRRQF NEIPGLMEGT AKPDYANCVK ISTDASIKEM IPPGALVMLT PLIVGTLFGV 660
  661 ETLSGVLAGS LVSGVQIAIS ASNTGGAWDN AKKYIEAGAS EHARQLGPKG SDAHKAAVIG 720
  721 DTIGDPLKDT SGPSLNILIK LMAVESLVFA PFFATHGGLL FKIF