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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49525971
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGEHLQRS LIRQYSYYYI AYDDLKNDLE TQLRKNNGEW SQELETEFLE SLETELDKVY  60
   61 SFCRVKQSEL SRRVKEVQEQ VSKTVRLIDS NNPPSELDFE ILEEELSDVI ADVHDLAKFS 120
  121 RLNYTGFQKI IKKHDKKTGF ILKPIFQVRL DAKPFFKENY DELVVKISQM YDFVRTSGKP 180
  181 IKGDSAAGGK QQNFVRQTTK YWVHPDNITE LKLIILKHLP VLVFNTNKEF EKEDSAITSI 240
  241 YYDNEDLDLY YGRLRKDEGA EAHRLRWYGG MSSDTIFVER KTHREDWTGE KSVKARFALK 300
  301 EKYVNDFMKG KYTVEQAFAK MRKEGKKSLK EIESLEALAT EVQYVMLKKK LRPVVRSFYN 360
  361 RTAFQLPGDA RVRISLDTEL TMVREDNFDG IDRTKGNWRR TDIGVDWSFK QVADKDICRF 420
  421 PYAVLEVKLQ TQFGQEPPEW VRELVRSHLV EPVPKFSKFI HGVATLLNDK VESIPFWLPQ 480
  481 MDVDIRKPAL PSHINITRPG QENEDDDDYD EDDEDDAALV AAMTENDRNA MDTEEMVGYG 540
  541 AVPSETEGHE NHSPNRAYYQ RQIRNSSNSI SRKYYQILST IDHYLNGDQI SKIPKGTVFD 600
  601 TQIKAPPGKT ICVPVRVEPK VYFATERTFL SWMSIAIILS GVSTSLLNYG TKTTMVASIG 660
  661 FFLTALITLV YTYIIYNMRV IYIREKWAVD YEDKIGPPLI CGCLILSMIF SFYCNMI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle