YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49525921
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSYAEFCTI GSAMILTSTG FLMGVFFACQ PYDYHLLFNP QATQEQFDLA LKHYQVLSTT  60
   61 PMPVLYLLGF VVALGIIGNT IRIYKPNPDL QLFEYASLGL FVLAVCVFIT NVKTGIECSI 120
  121 TGNWGEVTQN QGLAVIASSN IILLVMFLGV ILLQIGLWYT NYDYQKQLQA FYAEERKEQE 180
  181 AINQRKEEEF KKLSKKQQKK LAKEEATRKT D

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	29	0.91
Non-Cytoplasmic	30	62	0.92
Transmembrane Helix	63	83	0.91
Cytoplasmic	84	91	0.89
Transmembrane Helix	92	112	0.90
Non-Cytoplasmic	113	132	0.86
Transmembrane Helix	133	158	0.85
Cytoplasmic	159	211	0.97