YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49525845
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.95
Transmembrane Helix	32	54	0.93
Non-Cytoplasmic	55	455	0.95
Transmembrane Helix	456	477	0.86
Cytoplasmic	478	488	0.83
Transmembrane Helix	489	511	0.91
Non-Cytoplasmic	512	519	0.83
Transmembrane Helix	520	541	0.91
Cytoplasmic	542	559	0.81
Transmembrane Helix	560	581	0.86
Non-Cytoplasmic	582	587	0.73
Transmembrane Helix	588	607	0.92
Cytoplasmic	608	688	0.79
Transmembrane Helix	689	712	0.89
Non-Cytoplasmic	713	720	0.65
Transmembrane Helix	721	743	0.81
Cytoplasmic	744	761	0.65
Transmembrane Helix	762	783	0.89
Non-Cytoplasmic	784	808	0.65
Transmembrane Helix	809	829	0.82
Cytoplasmic	830	904	0.54
Transmembrane Helix	905	928	0.85
Non-Cytoplasmic	929	943	0.53
Transmembrane Helix	944	969	0.81
Cytoplasmic	970	981	0.50
Transmembrane Helix	982	1005	0.88
Non-Cytoplasmic	1006	1019	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDERVVRQAV LSTSSDEKRI YRSRMQKFSK SHALYVILLG ALAFLQFVAI AFFAKGFLLS  60
   61 RTVLDNVSTT SDNPLAVDKK FDKMVLLVVD ALRFDFVVPV STSHPNYNEN FHNNLDVLYN 120
  121 TWLSTRHGGR GGYSNSGSSI LLKFIADPPT TTLQRLKGLT TGSLPTFIDA GSNFDGSVIE 180
  181 EDNLIKQLFL ANKSVSFVGD DTWDALFHPF LANNSEPYPS LNVWDLDTVD NGVISYFKSH 240
  241 LLDKSADRNW DILVGHMLGV DHVGHKYGPN HFTMREKQNQ VNRFIQEIIE SIDNDTLLVV 300
  301 MGDHGMDHTG NHGGDSQDEL ESTLFFYTKR QNTWKNQNGN YDIENLAQNY HSVNQIDLVP 360
  361 TLSLLLDIPV PFNNLGWPIS EAFENEKEEL ACDNVVLQQL KRYADVMQLT YTEELEETMS 420
  421 ALWRNSTADV FAASQYQQKF LEVCKDKWAR FDYWSIASGT ILLTISLILL LSITKLIPSI 480
  481 VVNQMVPEFV PWIIIMSLIS NVCFHGIFYV FHQPVFLDNV WWCTLFASAV GIITGCSISI 540
  541 FDRYSFVWLV MKMVEILSDY WSRIGAMFVV IHAMLFTSNS FTIWEDRIVA IMLITFGMLT 600
  601 LYEFTFLPTR QSTSALLTAA IGEKQGTTSG VSQSTANSNN LPLTRFARLL GSYHSIVLIV 660
  661 STRVASVITI CREEQGEYCT PTFTTKNNYA WWCLGLCLLI VILLPICIKG YYNLSSSYQA 720
  721 AAPIWVDMFL KGALFVNFLY WSITAVENST ESLEWDTKTV KITIARIIAG FSLIATNVGW 780
  781 MMGPLCIKLN VKNADLKSNQ ATILGYTNIY GSEFFLLVIN ALMAIMLFNK PLAQLSLFLM 840
  841 VNQILSIFEI IDLLKLKENI VGPIALGLVA YQQFFSTGHQ ATIPSVQWDV GFILSDKIIF 900
  901 PFTHLGILLN TFGPHIIVSL SVALLTLWSQ PPDVLKPQTL LGRIVSNCGV LLTYNTVLCL 960
  961 SSFIWVTHFR RHLMVWKIFC PRFIFACLSL IVMQLVITFG TIGFASGRLI RHINDIFWK