YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RWA1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.88
Transmembrane Helix	7	28	0.86
Cytoplasmic	29	101	0.91
Transmembrane Helix	102	120	0.66
Non-Cytoplasmic	121	136	0.67
Transmembrane Helix	137	158	0.84
Cytoplasmic	159	178	0.72
Transmembrane Helix	179	195	0.72
Non-Cytoplasmic	196	200	0.66
Transmembrane Helix	201	223	0.84
Cytoplasmic	224	234	0.87
Transmembrane Helix	235	255	0.84
Non-Cytoplasmic	256	258	0.68
Transmembrane Helix	259	280	0.85
Cytoplasmic	281	287	0.83
Transmembrane Helix	288	311	0.84
Non-Cytoplasmic	312	339	0.93
Transmembrane Helix	340	359	0.84
Cytoplasmic	360	374	0.94
Transmembrane Helix	375	396	0.86
Non-Cytoplasmic	397	405	0.89
Transmembrane Helix	406	426	0.77
Cytoplasmic	427	434	0.72
Transmembrane Helix	435	455	0.79
Non-Cytoplasmic	456	470	0.78
Transmembrane Helix	471	495	0.82
Cytoplasmic	496	513	0.83
Transmembrane Helix	514	536	0.92
Non-Cytoplasmic	537	540	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDPGPITPG QVSFLLGVIP IFVGWIYSEL LEYRKSWVPL KPHSDNNLVE LGDVAEKDDD  60
   61 KADLLEGGLA RSPSVKFHNS SIRTNIIRFL SMEDSFLLEH RATLRAMSEF GAILIYFYIC 120
  121 DRTELLGDST KNYNRDLFLF LYVLLIIVSA MTSLRKHNDK SPISGKSILY LNRHQTEEWK 180
  181 GWMQVLFLMY HYFAAAEIYN AIRIFIAAYV WMTGFGNFSY YYVRKDFSVA RFAQMMWRLN 240
  241 FFVAFCCIVL NNDYMLYYIC PMHTLFTLMV YGALGIFSKY NEIGSVMALK IFSCFLVVFL 300
  301 LWEIPGAFEI FWGPLTFLLG YNDPAKPDLH RLHEWHFRSG LDRYIWIIGM IYAYYHPTVE 360
  361 RWMEKLEDCE TKKRLSIKAA IVTITVLVGY VWYECIYKLD RTSYNMYHPY TSWIPITVYI 420
  421 CLRNFTHQLR SVSLTLFAWL GKITLETYIS QFHIWLRSNM PDGQPKWLLS IIPGYPMLNF 480
  481 MLTTAIYVLV SHRLFELTNT LKTVFVPTKD NKRLFSNFIA GIAIALPLYC FSFVLLQIHR 540
  541