YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TVP38_CANGA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTDNADLGQ EDIDVFDNGR ESFDRLNKPV LDGIGIEGND DDDDDYLTLY NMTPRERLMY  60
   61 TFRRSMYKAL DHFNSLPKWQ RLLIILFGAL VIVLGILMLI FHNKILDKVL ETSKDLNERS 120
  121 STNFILLVLL FFVGFPPMIG YSFLSTSTGL IYGVSFHGWF VLALGSVTGS VASFYVFKNL 180
  181 LHSRAEKLVH MNKRFEAFAS ILQEDNSYLM LALLRLCPFP YSLTNGAIAG IYGISVKNFT 240
  241 IANIITTPKL LIYLFIGARI KNMAEDHSTS SRIFDLVSIL ITLIIFTLTA WLLYFKTKQR 300
  301 YAQLKNQAVA QNSSANREVD FEI

Type	Start	End	Confidence
Non-Cytoplasmic	1	81	0.96
Transmembrane Helix	82	102	0.95
Cytoplasmic	103	121	0.90
Transmembrane Helix	122	144	0.89
Non-Cytoplasmic	145	155	0.85
Transmembrane Helix	156	177	0.93
Cytoplasmic	178	215	0.86
Transmembrane Helix	216	234	0.66
Non-Cytoplasmic	235	272	0.45
Transmembrane Helix	273	295	0.92
Cytoplasmic	296	323	0.54