YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49525289
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVGEFFGH PGRRPMFRHR ANIPVIKSDC EYEESCNEKN DPKNDETICR VDSFNNSSSD  60
   61 SSLNDVHLQD DGNILTTHNF TGLSTSRTDK VLDWMVMVAG SQFMFFLIWI ILIIWIVTGI 120
  121 IYNGPFNWQV VMQDGQSIQC YVWDTLLMRQ QLNSTHEQIL IISDIRSRLA SFSGFFERLS 180
  181 FACIKGSKES DVDTTAQGVD ESSNKSDINC DCEDKNETTE FIKTGELPVE NWYDNLCTKA 240
  241 SYIIGSIPMM IAFWLGVMVW IVCGIIPKDA GNSPPFTGET TGSNPKLKKF SDTWQMYINT 300
  301 AVAVSLLICS TFLQNIRARH DKFIAKFLLQ IYDLEHEIDT KLRTALNDYD TLHPIIEVAP 360
  361 VKRSKLEVII DWYADVIGTG IGVVVAIIVF GVWIGIGQPL HWNDNWWLII GTYTGLVGFL 420
  421 DGYIIRQVYF KIIQHEENNF QMLADEDMAL FQRYNIPCED EYFGIKGPVK MNWNLKISTY 480
  481 INYLCASQWS VVCSVLIILG LIGAASGLKW STTGQLIANT PTMIIEEFFL IVLIQAHNEA 540
  541 DLERRKEVTA LYMRRKLLLN YVKKELGISH

Type	Start	End	Confidence
Non-Cytoplasmic	1	101	0.49
Transmembrane Helix	102	124	0.85
Cytoplasmic	125	241	0.65
Transmembrane Helix	242	266	0.82
Non-Cytoplasmic	267	295	0.69
Transmembrane Helix	296	316	0.69
Cytoplasmic	317	371	0.97
Transmembrane Helix	372	396	0.91
Non-Cytoplasmic	397	405	0.88
Transmembrane Helix	406	425	0.94
Cytoplasmic	426	479	0.96
Transmembrane Helix	480	505	0.82
Non-Cytoplasmic	506	515	0.77
Transmembrane Helix	516	536	0.64
Cytoplasmic	537	570	0.70