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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49525065, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSESEPH SPQLSHTSVA ESMVSMNTED HNELYDHRQH ISVPPRLGQD SPGSSNLNAR  60
   61 HMMLDDRANE DFGFMNIEGA DSDCEPLGKD HHKLRSTALQ NSNARPSRLA HTVNHQEVVQ 120
  121 PATITTDNSE LKKNVSAISA SPPTKTRRQS NTFSLTDKKP LKRTMSRHNS VNSAVSSSNR 180
  181 LNLAAVSRSI SHKSVDDDNL KRKITRASFS SDNSQASRES QETEEDVCFP MPPQLHSRVN 240
  241 GIDFDELEEF AEQVNEQKKL CEISLSAQKS GSNGIQASGS SSSANSYMSE AALKYTPKHL 300
  301 RKDLSPPKSE SLNSNSSNSP DSNQPQGVSF GNNKIEGEDE PYEEKPQAYT QTPENQFYGD 360
  361 GSFKAPDRFS FFSSEMEETI HATDIANLVT PGQSFFDLFR GGEPTWWLDC SYPTDDEMRC 420
  421 LAKAFGIHPL TAEDIRMQET REKVELFKSY YFVCFHTFEN DNESEDFLEP INVYVVVFRS 480
  481 GVLTFHFGPI SHCANVRRRV RQLRDYVDVN SDWLCYALID DITDSFAPVI RSIELEADSI 540
  541 EDSVFMARDL DFAAMLQRIG ESRRKTMTLM RLLSGKADVI KMFAKRCQDE ANGIGPALTS 600
  601 EVNIANLTSS SDPNVKYMQK LQMNTQPRGD IALYLGDIQD HLLTMYQNLS AYEKIFSRSH 660
  661 TNYLAQLQVE SFNSNNKVTE MLGKVTMIGT VLVPLNLITG LFGMNVKVPG QDTSIAWWFG 720
  721 ILGVMIGIAI CLWFLASLWI KSLVPPATLN EAAESGAKSI LSSFIPRGPK NENDPKYSRG 780
  781 RSKYGGPSNR SIASLPSKYS RYD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle