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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49524715
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFQRQKEK SSFLHLNDLS QASPFYQSST VNLKEQANKY TSPLGPRSLA SSPQRSLSSF  60
   61 SQVRLDNLVK EKQWDEIEDF LLEELRDGYF DAMFAKPEPD FRSDPTNEDN RITENNTNVP 120
  121 KRLTSQIHTT VKNDIHVLST RFLEDASHNV ISILKFSITF FVAFIICAIH PSGSWLGHRY 180
  181 RYFLPIAAVI HHPVRNVGIQ LEISILSISG AAFGLGWASL AWYVSTATHP VASHQGAILF 240
  241 QSLFMALLFS TFVRELYRRL NYFFNSFSVA IIFTHTVQLV NNKHDLHWKL YWDFGLSYLF 300
  301 GILLSCFICA VVFPQTGNSS LVREYRKSLF ACRDFLVSLI DKENVANVDR KDKHQKNMIQ 360
  361 QLNVGLAQEY REISAQISFS KYDRIKLKTL RNSLTALVSP LRVIPVNSEL LDEAYLTKLY 420
  421 DALEKSALSK GQSLANSQAN TGASTPLGKH FASGSMTKLS NRILKGDFSQ KDIYLSILRS 480
  481 SFSKDIFSLL IEMITVLESL ANILDMVNRN KNENIEKTLT ELNARLKHRI YKLDMCYRNF 540
  541 TSSSYFGPDI LKDTACVDCF LFLRYIRNSA KGLVTVIDDC EKLLEDVHWR LLLPNYPLDR 600
  601 ALTRLSKQCE LDEGAGNVLH YFETKKDVDE IFERLYNAYT SRHKYNKDEK NEKLGATIRA 660
  661 MDHTDFNFHS TKNKWRYNLW RFTTILSGTE MKWSIKVVFI MVFLCIPAWL PESYHWYQEF 720
  721 QCWWCPMIFY LLVHRRYSGS WSSPVRRVGY ALLGIFWGWA ANQARHFSSP YVICTFAAIL 780
  781 VVPISLNFLV YKNTKSSMTS LLCFAVICLE PYSKGDDNHN TSKIWKNTWI TGLALLIGIS 840
  841 LSIPINWVVW SFKARVELRI SMSSLLAHLS QSYQTVSDRY LYRDANDEPT DLALALAHIR 900
  901 EVRLTQSITA IRELLDKASV EPKFISNFST VKYNSLINSC SFLLEKIIEA RISGTYFEIW 960
  961 EQDNDKEVSR ALMSLRRDSV ASVVFVFYIL SNCFRSKNKI PRYLPNPILS RKKLYDMIAK1020
 1021 FEAIGKMKAT GENKFNQAKG INYNDDTLEK MMFKKHLQVD SSANSSNQYI DYEQYHWTEV1080
 1081 HGIAFARAYT DVAEAVHDVV KRCKDILGEE FY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle