YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49524615, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTRRGKPA FEEMSEGREE FPVIEENGEN GEDYMDNDEE RPTLSRRASS IFSIDTTPLA  60
   61 PPNKTDIEMF TSDAYHFSMI RNLHLADYIT MLNGFCGFYS IVSCLRFTLT GKPHYVQRAH 120
  121 FFIFLGMCFD FFDGRVARLR NRSSLMGQEL DSLADLVSFG VAPAAIAFAI GFQTTLDVFV 180
  181 LSFFVLCALA RLARFNVTVG QLPKDVKGKS KFFEGLPMPT TLLLVLGMAC LVRQNRIFDN 240
  241 IPLGIVREGL AFEFHPIIFI FFLHGCGMIS KSLKIPKP

Type	Start	End	Confidence
Cytoplasmic	1	87	0.97
Transmembrane Helix	88	109	0.91
Non-Cytoplasmic	110	115	0.86
Transmembrane Helix	116	137	0.84
Cytoplasmic	138	151	0.91
Transmembrane Helix	152	172	0.90
Non-Cytoplasmic	173	177	0.75
Transmembrane Helix	178	195	0.92
Cytoplasmic	196	211	0.85
Transmembrane Helix	212	232	0.87
Non-Cytoplasmic	233	250	0.82
Transmembrane Helix	251	270	0.88
Cytoplasmic	271	278	0.76