YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50285493, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFATYFISL YCTVIYKYSE LAARQFSDRF PLYYSLNAEP IPISMPILLI DLVMLAVSSI  60
   61 VIFQLWKYRA TRNVKQGTSL LLICIFLMIL IFSYFTYICA EYNLPERNSG RFGVYYIEHV 120
  121 NYLWVIGQFL SAVKYLPQIS LNWMGISTKG LSPKYLKISI IATSILQASN LCSFIDNLEF 180
  181 YQWPFNLTPR VVSFLQLIWL GIIYYQHYYA YAMNKPYLKR IYE

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.89
Transmembrane Helix	43	66	0.88
Cytoplasmic	67	76	0.88
Transmembrane Helix	77	98	0.92
Non-Cytoplasmic	99	119	0.83
Transmembrane Helix	120	137	0.83
Cytoplasmic	138	154	0.75
Transmembrane Helix	155	175	0.79
Non-Cytoplasmic	176	190	0.74
Transmembrane Helix	191	210	0.85
Cytoplasmic	211	223	0.87