YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49524189
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLNKISFPK SFFGFLPLYL GVEIVLGITI LNKCSGAYGI LALFTGHPLD YMQWISYLWS  60
   61 VFTLIVFSQG LFMIHKPKLI VFSQILVYFT ADTVLTCFFT LWFSAQWFQS ANEEKHETSA 120
  121 PVGVSQNYRR STDLASQGAS ERYEYTVTML FTLVTLMFRM YFNFILASFV QELLRHPKYM 180
  181 VDQDDVEQDL KNKSAIKRWW IKSQKFCYKL CRHTLQ

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	31	0.91
Non-Cytoplasmic	32	53	0.78
Transmembrane Helix	54	73	0.95
Cytoplasmic	74	84	0.71
Transmembrane Helix	85	103	0.96
Non-Cytoplasmic	104	146	0.94
Transmembrane Helix	147	170	0.78
Cytoplasmic	171	216	0.91